PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.D4PZ8
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family ERF
Protein Properties Length: 216aa    MW: 24118.7 Da    PI: 7.6171
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.D4PZ8genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.51.6e-18755254
          AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkle 54
                 +y+GVr+++ +g+Wv+eIr+p        +r++lg+f tae+Aa+a+++a++ + 
  Aradu.D4PZ8  7 RYRGVRQRH-WGSWVSEIRHP-----LlkTRIWLGTFETAEDAARAYDEAARLMC 55
                 69******9.**********8.....334**********************8775 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.91E-34664No hitNo description
SuperFamilySSF541716.28E-21765IPR016177DNA-binding domain
PfamPF008472.7E-11756IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.1E-34764IPR001471AP2/ERF domain
PROSITE profilePS5103221.127764IPR001471AP2/ERF domain
SMARTSM003806.2E-41770IPR001471AP2/ERF domain
PRINTSPR003673.7E-11819IPR001471AP2/ERF domain
PRINTSPR003673.7E-113046IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MARPQQRYRG VRQRHWGSWV SEIRHPLLKT RIWLGTFETA EDAARAYDEA ARLMCGPKAR  60
TNFPFNPNLS QSSSSSSSSS KLLSPTLTAK LHKCHLASLA LQMSNNKQKS SQPNKDPQPP  120
PPSSSSSTSS NNRLFNNQFP IGAGTIAYEE LHWLEGNNNN NNNINNNNWG GIIEGHHQVE  180
VAQQQFQPVL EDDHIEQMIQ ELLDCGSIEL CSIGSN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A6e-18665161ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1419111e-69BT141911.1 Medicago truncatula clone JCVI-FLMt-4B22 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015938082.11e-160PREDICTED: ethylene-responsive transcription factor ERF003-like
SwissprotQ94AW57e-71ERF03_ARATH; Ethylene-responsive transcription factor ERF003
TrEMBLA0A0S3SV971e-89A0A0S3SV97_PHAAN; Uncharacterized protein
TrEMBLA0A0L9VV961e-89A0A0L9VV96_PHAAN; Uncharacterized protein
STRINGGLYMA08G23160.16e-88(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110634110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25190.12e-49ERF family protein